Sophios documentation

Contents:

• Main Features / Design Overview
  • Advanced Features
• Install Guide
  • vscode
• Tutorials
  • Hello World
  • Multi-step workflows
  • Subworkflows e.g. “macros”
  • Naming Conventions
• User Guide
  • Main Features / Design Overview
  • auto-discovery
  • Edges
  • Edge Inference Algorithm
  • Explicit Edges
  • Inline Inputs
  • Python API (experimental)
  • Partial Failures
  • Parallelization
• Advanced Features
  • Edge Inference Configuration
  • Static dispatch
  • Subinterpreters
  • YAML Metadata Annotations
  • Namespaces
  • Miscellaneous
• Validation guide
• Formal Schemas
  • Different levels of strictness
  • The WIC schema
  • TL;DR
  • Property Based Testing
  • Well what about … !?!
• Install Guide
  • download
  • docker
  • podman
  • Installation on Windows
  • conda
  • install
  • testing
  • documentation
  • vscode extensions
• Developer Guide
  • Coding Standards
  • Git Etiquette
  • Known Issues
  • Partial Failures
  • Workflow Development
  • Singularity
  • Toil
• Algorithms
  • Namespacing
  • Compilation Algorithm
  • Deferred Satisfaction
  • Explicit Edges
  • Edge Inference
  • Speculative Compilation
• Coding Standards
  • Tooling
  • MyPy Type Annotations
  • Docstrings
  • Integration / Regression Tests
  • CI/CD
  • Linting
• git etiquette
  • Branching Model
  • rebaseing ‘vs’ squashing
  • Commit Frequency
  • Testing and CI/CD
  • .gitignore
• Developer API
  • sophios.ast
  • sophios.cli
  • sophios.compiler
  • sophios.cwl_subinterpreter
  • sophios.inference
  • sophios.inlineing
  • sophios.input_output
  • sophios.main
  • sophios.plugins
  • sophios.python_cwl_adapter
  • sophios.run_local
  • sophios.schemas.wic_schema
  • sophios.utils
  • sophios.utils_cwl
  • sophios.utils_graphs
  • sophios.wic_types

Indices and tables

• Index

• Module Index

• Search Page