Python Module Index

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- sophios
    sophios.apis.python.tool_builder
    sophios.apis.python.workflow
    sophios.ast
    sophios.cli
    sophios.compiler
    sophios.compute_payload
    sophios.compute_submit
    sophios.cwl_subinterpreter
    sophios.inference
    sophios.inlineing
    sophios.input_output
    sophios.main
    sophios.plugins
    sophios.python_cwl_adapter
    sophios.run_local
    sophios.run_local_async
    sophios.schemas.wic_schema
    sophios.utils
    sophios.utils_cwl
    sophios.utils_graphs
    sophios.utils_yaml
    sophios.wic_types

Sophios

Navigation

Start Here

  • Overview
  • Install Guide
  • Python Workflow API

Python API

  • Running a Multistep Workflow Locally
  • Building Tool Contracts in Python
  • Using Tool Builder and the Workflow Python API Together
  • From Python Workflow to Compute Payload
  • Canonical Python-to-Compute Flow with ichnaea_compact.py
  • Python API Reference

Advanced YAML and Operations

  • Advanced YAML and Operations
  • Advanced YAML Tutorials
  • Validation Guide

Developers

  • Developer Install Guide
  • Developer Guide
  • Algorithms
  • Coding Standards
  • Git Etiquette
  • Developer API

Related Topics

  • Documentation overview

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